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Google Keyword Rankings for : hybrid error correction and de novo
1
Hybrid error correction and de novo assembly of single ... - NCBI
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707490/
With this new method, we were able to perform a hybrid error correction of the nanopore reads using complementary MiSeq data and produce a de novo assembly that ...
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707490/
With this new method, we were able to perform a hybrid error correction of the nanopore reads using complementary MiSeq data and produce a de novo assembly that ...
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2
A comparative evaluation of hybrid error ... - Genome Biology
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1605-z
Several standalone error correction tools have been proposed to correct sequencing errors in Illumina data in order to facilitate de novo ...
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https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1605-z
Several standalone error correction tools have been proposed to correct sequencing errors in Illumina data in order to facilitate de novo ...
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3
Hybrid error correction approach and de novo assembly for ...
https://ieeexplore.ieee.org/document/7822504
This paper presents a new approach for error correction and de novo assembly for long reads. We present MiRCA a hybrid approach based on the sequences ...
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https://ieeexplore.ieee.org/document/7822504
This paper presents a new approach for error correction and de novo assembly for long reads. We present MiRCA a hybrid approach based on the sequences ...
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4
Oxford Nanopore sequencing, hybrid error correction, and de ...
https://genome.cshlp.org/content/25/11/1750/suppl/DC1
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Supplemental Material. Files in this Data Supplement:.
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https://genome.cshlp.org/content/25/11/1750/suppl/DC1
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Supplemental Material. Files in this Data Supplement:.
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5
PRIME PubMed | Oxford Nanopore sequencing, hybrid error ...
https://brain.unboundmedicine.com/medline/citation/26447147/Oxford_Nanopore_sequencing_hybrid_error_correction_and_de_novo_assembly_of_a_eukaryotic_genome_
PubMed journal article: Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Download Prime PubMed App to ...
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https://brain.unboundmedicine.com/medline/citation/26447147/Oxford_Nanopore_sequencing_hybrid_error_correction_and_de_novo_assembly_of_a_eukaryotic_genome_
PubMed journal article: Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Download Prime PubMed App to ...
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6
An Error Correction and DeNovo Assembly Approach for ...
https://www.eurekaselect.com/152759/article
The purpose of error correction is to facilitate data analysis for large projects like de novo assembly project. Here we present a new hybrid algorithm for ...
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https://www.eurekaselect.com/152759/article
The purpose of error correction is to facilitate data analysis for large projects like de novo assembly project. Here we present a new hybrid algorithm for ...
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7
https://doi.org/10.1101%2Fgr.191395.115
https://doi.org/10.1101%2Fgr.191395.115
› ...
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https://doi.org/10.1101%2Fgr.191395.115
› ...
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8
Hybrid error correction approach and de novo assembly for minion ...
https://www.computer.org/csdl/proceedings-article/bibm/2016/07822504/12OmNqGRG8B
This paper presents a new approach for error correction and de novo assembly for long reads. We present MiRCA a hybrid approach based on the sequences ...
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https://www.computer.org/csdl/proceedings-article/bibm/2016/07822504/12OmNqGRG8B
This paper presents a new approach for error correction and de novo assembly for long reads. We present MiRCA a hybrid approach based on the sequences ...
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9
A comparative evaluation of hybrid error correction ... - Scinapse
https://asset-pdf.scinapse.io/prod/2921990535/2921990535.pdf
of standardized assessments for these long-read error-correction methods. ... on two downstream applications of long reads: de novo assembly and resolving ...
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https://asset-pdf.scinapse.io/prod/2921990535/2921990535.pdf
of standardized assessments for these long-read error-correction methods. ... on two downstream applications of long reads: de novo assembly and resolving ...
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10
Hybrid error correction and de novo assembly of ... - DukeSpace
https://dukespace.lib.duke.edu/dspace/handle/10161/9301
Hybrid error correction and de novo assembly of single-molecule sequencing reads. ... 847 total citations on Dimensions. ... Single-molecule ...
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https://dukespace.lib.duke.edu/dspace/handle/10161/9301
Hybrid error correction and de novo assembly of single-molecule sequencing reads. ... 847 total citations on Dimensions. ... Single-molecule ...
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11
Oxford Nanopore Sequencing, Hybrid Error Correction, and ...
https://www.biorxiv.org/content/10.1101/013490v2.full
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome. Sara Goodwin, James Gurtowski, ...
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https://www.biorxiv.org/content/10.1101/013490v2.full
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome. Sara Goodwin, James Gurtowski, ...
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12
Efficient Hybrid De Novo Error Correction and Assembly for Long ...
https://www.semanticscholar.org/paper/Efficient-Hybrid-De-Novo-Error-Correction-and-for-Kchouk-Elloumi/eb090c561d50af291fcf028927cb3e8663e358af
This paper presents a new denovo self-error correction algorithm using only long reads that does not require high quality reads, in contrast to existing ...
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https://www.semanticscholar.org/paper/Efficient-Hybrid-De-Novo-Error-Correction-and-for-Kchouk-Elloumi/eb090c561d50af291fcf028927cb3e8663e358af
This paper presents a new denovo self-error correction algorithm using only long reads that does not require high quality reads, in contrast to existing ...
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13
(PDF) Hybrid error correction de novo assembly of single ...
https://www.researchgate.net/publication/228102549_Hybrid_error_correction_de_novo_assembly_of_single-molecule_sequencing_reads
However, the error rates of single-molecule reads are high, which has limited their use thus far to resequencing bacteria. To address this limitation, we ...
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https://www.researchgate.net/publication/228102549_Hybrid_error_correction_de_novo_assembly_of_single-molecule_sequencing_reads
However, the error rates of single-molecule reads are high, which has limited their use thus far to resequencing bacteria. To address this limitation, we ...
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14
An Error Correction and DeNovo Assembly ... - Ingenta Connect
https://www.ingentaconnect.com/content/ben/cbio/2018/00000013/00000003/art00005
The purpose of error correction is to facilitate data analysis for large projects like de novo assembly project. Here we present a new hybrid ...
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https://www.ingentaconnect.com/content/ben/cbio/2018/00000013/00000003/art00005
The purpose of error correction is to facilitate data analysis for large projects like de novo assembly project. Here we present a new hybrid ...
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15
Oxford Nanopore sequencing, hybrid error correc0on, and de ...
https://bioinfo.ut.ee/web/wp-content/uploads/2015/11/Oxford-Nanopore-sequencing-hybrid-error-correction-and-de-novo-assembly-of-a-eukaryotic-genome.pdf
hybrid error correc0on, and de novo assembly of a eukaryo0c genome. Sara Goodwin, James Gurtowski, Sco<. Ethe-‐Sayers, Panchajanya Deshpande,.
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https://bioinfo.ut.ee/web/wp-content/uploads/2015/11/Oxford-Nanopore-sequencing-hybrid-error-correction-and-de-novo-assembly-of-a-eukaryotic-genome.pdf
hybrid error correc0on, and de novo assembly of a eukaryo0c genome. Sara Goodwin, James Gurtowski, Sco<. Ethe-‐Sayers, Panchajanya Deshpande,.
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16
(PDF) Hybrid error correction and de novo assembly of single ...
https://www.academia.edu/22606390/Hybrid_error_correction_and_de_novo_assembly_of_single_molecule_sequencing_reads
Hybrid error correction and de novo assembly of single-molecule sequencing reads · Related Papers · RELATED PAPERS · RELATED TOPICS.
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https://www.academia.edu/22606390/Hybrid_error_correction_and_de_novo_assembly_of_single_molecule_sequencing_reads
Hybrid error correction and de novo assembly of single-molecule sequencing reads · Related Papers · RELATED PAPERS · RELATED TOPICS.
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17
Hybrid error correction and de novo assembly of single ... - Wikidata
https://www.wikidata.org/wiki/Q28270032
Hybrid error correction and de novo assembly of single-molecule sequencing reads (English). 0 references. main subject · biotechnology. 0 references.
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https://www.wikidata.org/wiki/Q28270032
Hybrid error correction and de novo assembly of single-molecule sequencing reads (English). 0 references. main subject · biotechnology. 0 references.
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18
A de novo Full-Length mRNA Transcriptome Generated From ...
https://www.frontiersin.org/articles/10.3389/fgene.2021.656334/full
Hybrid Error-Correction Increased the Sequence Accuracy and Allowed for Removal of Sequencing Artifacts. The results from the Pacbio sequencing ...
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https://www.frontiersin.org/articles/10.3389/fgene.2021.656334/full
Hybrid Error-Correction Increased the Sequence Accuracy and Allowed for Removal of Sequencing Artifacts. The results from the Pacbio sequencing ...
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19
The present and future of de novo whole-genome assembly
https://academic.oup.com/bib/article/19/1/23/2339783
de novo assembly algorithms, de Bruijn graph, next-generation sequencing, ... The hybrid assembly pipeline uses hybrid error correction methods, whereas the ...
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https://academic.oup.com/bib/article/19/1/23/2339783
de novo assembly algorithms, de Bruijn graph, next-generation sequencing, ... The hybrid assembly pipeline uses hybrid error correction methods, whereas the ...
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20
REVIEW - Current challenges and solutions of de novo ...
https://link.springer.com/content/pdf/10.1007/s40484-019-0166-9.pdf
sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res., 25, 1750-1756. 17. Oikonomopoulos, S., Wang, Y. C., ...
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https://link.springer.com/content/pdf/10.1007/s40484-019-0166-9.pdf
sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res., 25, 1750-1756. 17. Oikonomopoulos, S., Wang, Y. C., ...
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21
Oxford Nanopore sequencing, hybrid error correction, and de ...
https://cyberleninka.org/article/n/1146391
To make use of these data, we developed a novel open-source hybrid error correction algorithm Nanocorr specifically for Oxford Nanopore reads, because existing ...
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https://cyberleninka.org/article/n/1146391
To make use of these data, we developed a novel open-source hybrid error correction algorithm Nanocorr specifically for Oxford Nanopore reads, because existing ...
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22
Hybrid error correction and de novo assembly of single ... - OSTI.GOV
https://www.osti.gov/biblio/1153615-hybrid-error-correction-de-novo-assembly-single-molecule-sequencing-reads
Title: Hybrid error correction and de novo assembly of single-molecule sequencing reads ; Research Org.: USDOE Joint Genome Institute (JGI), Berkeley, CA (United ...
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https://www.osti.gov/biblio/1153615-hybrid-error-correction-de-novo-assembly-single-molecule-sequencing-reads
Title: Hybrid error correction and de novo assembly of single-molecule sequencing reads ; Research Org.: USDOE Joint Genome Institute (JGI), Berkeley, CA (United ...
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23
Can we use it? On the utility of de novo and reference-based ...
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0226234
Unlike for PacBio, plastome assemblies based solely on Nanopore reads are rarely found, due to their high error rate and non-random error ...
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https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0226234
Unlike for PacBio, plastome assemblies based solely on Nanopore reads are rarely found, due to their high error rate and non-random error ...
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24
Hybrid error correction and de novo assembly of single-molecule ...
https://www.jcvi.org/publications/hybrid-error-correction-and-de-novo-assembly-single-molecule-sequencing-reads
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature biotechnology. 2012-07-01; 30.7: 693-700.
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https://www.jcvi.org/publications/hybrid-error-correction-and-de-novo-assembly-single-molecule-sequencing-reads
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature biotechnology. 2012-07-01; 30.7: 693-700.
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25
Objective review of de novo stand‐alone error correction ...
https://onlinelibrary.wiley.com/doi/10.1002/wcms.1239
Multiple studies have demonstrated the impact of sequencing errors on different applications of NGS, making error correction a fundamental ...
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https://onlinelibrary.wiley.com/doi/10.1002/wcms.1239
Multiple studies have demonstrated the impact of sequencing errors on different applications of NGS, making error correction a fundamental ...
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26
hybrid sequencing | Genohub Blog
https://blog.genohub.com/tag/hybrid-sequencing/
As alternatives to using PacBio sequencing alone for eukaryotic de novo assemblies, error correction strategies using hybrid sequencing have ...
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https://blog.genohub.com/tag/hybrid-sequencing/
As alternatives to using PacBio sequencing alone for eukaryotic de novo assemblies, error correction strategies using hybrid sequencing have ...
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27
Current challenges and solutions of de novo assembly
https://journal.hep.com.cn/qb/EN/10.1007/s40484-019-0166-9
However, numerous technical or computational challenges in de novo assembly still ... hybrid error correction, and de novo assembly of a eukaryotic genome.
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https://journal.hep.com.cn/qb/EN/10.1007/s40484-019-0166-9
However, numerous technical or computational challenges in de novo assembly still ... hybrid error correction, and de novo assembly of a eukaryotic genome.
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28
Hybrid'De'Novo'Assembly'of' Eukaryo6c'Genomes'
http://schatz-lab.org/presentations/2013/2013-06-18.PBUserMeeting.pdf
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Koren, S, Schatz, MC, et al. (2012) Nature Biotechnology. doi:10.1038/nbt.
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http://schatz-lab.org/presentations/2013/2013-06-18.PBUserMeeting.pdf
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Koren, S, Schatz, MC, et al. (2012) Nature Biotechnology. doi:10.1038/nbt.
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29
Oxford Nanopore sequencing, hybrid error correction, and de novo ...
https://www.bmj.com/content/2/1817/1057.full.pdf
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Sara Goodwin,1 James Gurtowski,1 Scott Ethe-Sayers, ...
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https://www.bmj.com/content/2/1817/1057.full.pdf
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Sara Goodwin,1 James Gurtowski,1 Scott Ethe-Sayers, ...
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30
Hybrid error correction and de novo assembly of ... - OneSearch
https://onesearch.library.uwa.edu.au/discovery/openurl?institution=61UWA_INST&rfr_id=info:sid%2Fprimo.exlibrisgroup.com-bX-Bx&rft_val_fmt=info:ofi/fmt:kev:mtx:&rft.epage=700&rft.volume=30&rft_id=info:doi/&rfr_id=info:sid/primo.exlibrisgroup.com-62109302-Bx&rft.jtitle=Nature%20biotechnology&rft.isbn=&rft.btitle=&rft.genre=article&rft.issue=7&rft.auinit1=A&rft.eisbn=&rft.aulast=Phillippy&rft.auinit=A%20M&rft.spage=693&rft.au=Phillippy,%20Adam%20M&rft.atitle=Hybrid%20error%20correction%20and%20de%20novo%20assembly%20of%20single-molecule%20sequencing%20reads.&rft_dat=&rft.issn=1087-0156&rft.eissn=1546-1696&svc_dat=CTO&u.ignore_date_coverage=true&vid=61UWA_INST:UWA
Hybrid error correction and de novo assembly of single-molecule sequencing reads.-article.
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Hybrid error correction and de novo assembly of single-molecule sequencing reads.-article.
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31
Hybrid Error Correction and De Novo Assembly of Single-Molecule ...
http://bioinf.spbau.ru/en/content/hybrid-error-correction-and-de-novo-assembly-single-molecule-sequencing-reads
Hybrid Error Correction and De Novo Assembly of Single-Molecule Sequencing Reads. Submitted by alexeigurevich on 31 Jul 2012, Tue, 17:36.
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http://bioinf.spbau.ru/en/content/hybrid-error-correction-and-de-novo-assembly-single-molecule-sequencing-reads
Hybrid Error Correction and De Novo Assembly of Single-Molecule Sequencing Reads. Submitted by alexeigurevich on 31 Jul 2012, Tue, 17:36.
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32
Article - Hybrid error correction and de novo assembly of ... - Scilit
https://www.scilit.net/article/5d2d9abec5d3ce2be5e466d54694d6d3
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Sergey Koren. ,. Michael Schatz. , Brian P Walenz, Jeffrey Martin,.
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https://www.scilit.net/article/5d2d9abec5d3ce2be5e466d54694d6d3
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Sergey Koren. ,. Michael Schatz. , Brian P Walenz, Jeffrey Martin,.
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33
Evaluation of hybrid and non-hybrid methods for de novo ...
https://tufts.primo.exlibrisgroup.com/discovery/fulldisplay?docid=cdi_proquest_miscellaneous_1816631209&context=PC&vid=01TUN_INST:01TUN&lang=en&search_scope=MyInst_and_CI&adaptor=Primo%20Central&query=creator%2Cexact%2C%20Paten%2C%20Benedict%20%2CAND&facet=citing%2Cexact%2Ccdi_FETCH-LOGICAL-1557t-3821e4c30902af0cfdc22b3537b554e0ef6995d3847676f17a8f080da2c876b03&offset=0
We benchmarked five non-hybrid (in terms of both error correction and scaffolding) assembly pipelines as well as two hybrid assemblers which use third ...
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https://tufts.primo.exlibrisgroup.com/discovery/fulldisplay?docid=cdi_proquest_miscellaneous_1816631209&context=PC&vid=01TUN_INST:01TUN&lang=en&search_scope=MyInst_and_CI&adaptor=Primo%20Central&query=creator%2Cexact%2C%20Paten%2C%20Benedict%20%2CAND&facet=citing%2Cexact%2Ccdi_FETCH-LOGICAL-1557t-3821e4c30902af0cfdc22b3537b554e0ef6995d3847676f17a8f080da2c876b03&offset=0
We benchmarked five non-hybrid (in terms of both error correction and scaffolding) assembly pipelines as well as two hybrid assemblers which use third ...
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34
Hybrid assembly of ultra-long Nanopore reads augmented ...
https://www.sciencedirect.com/science/article/pii/S0888754318305603
Walenz, et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol., 30 (2012), pp. 693 ...
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https://www.sciencedirect.com/science/article/pii/S0888754318305603
Walenz, et al. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol., 30 (2012), pp. 693 ...
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35
SMARTdenovo: a de novo assembler using long noisy reads
https://gigabytejournal.com/articles/15
KorenS Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol., 2012; 30: 693–700.
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https://gigabytejournal.com/articles/15
KorenS Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol., 2012; 30: 693–700.
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36
Comparison of De Novo Assembly Strategies for Bacterial ...
https://www.mdpi.com/1422-0067/22/14/7668/htm
Homopolish is an SVM-based polishing model for the correction of systematic ONT errors by using homologous sequences. In conjunction with Medaka, genome quality ...
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https://www.mdpi.com/1422-0067/22/14/7668/htm
Homopolish is an SVM-based polishing model for the correction of systematic ONT errors by using homologous sequences. In conjunction with Medaka, genome quality ...
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37
How to generate a complete genome with hybrid assembly
https://thesequencingcenter.com/knowledge-base/complete-genome-assembly/
Unicycler uses the miniasm de novo assembler and Racon consensus error correction tool for the assembly of Nanopore long-read sequences. Miniasm ...
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https://thesequencingcenter.com/knowledge-base/complete-genome-assembly/
Unicycler uses the miniasm de novo assembler and Racon consensus error correction tool for the assembly of Nanopore long-read sequences. Miniasm ...
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38
Part 4. De-novo Assembly · Introduction to Genomics
https://biomedicalhub.github.io/genomics/04-part4-denovo-assembly.html
The advantage of SPAdes is that it does lot of error correction and checking ... of data used in “Evaluation and validation of de novo and hybrid assembly ...
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https://biomedicalhub.github.io/genomics/04-part4-denovo-assembly.html
The advantage of SPAdes is that it does lot of error correction and checking ... of data used in “Evaluation and validation of de novo and hybrid assembly ...
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39
Oxford Nanopore sequencing, hybrid error ... - MultiSearch
https://multisearch.mq.edu.au/discovery/openurl?institution=61MACQUARIE_INST&rfr_id=info:sid%252Fprimo.exlibrisgroup.com-bX-Bx&rft_val_fmt=info:ofi/fmt:kev:mtx:&rft.epage=1756&rft.volume=25&rft_id=info:doi/&rfr_id=info:sid/primo.exlibrisgroup.com-105464210-Bx&resource_type=article&rft.isbn_list=&rft.jtitle=Genome%20research&rft.genre=article&rft.issue=11&rft.auinit1=S&rft.aulast=Goodwin&rft.auinit=S&rft.date=2015&rft.eisbn_list=&rft.spage=1750&rft.au=Goodwin,%20Sara&rft.atitle=Oxford%20Nanopore%20sequencing,%20hybrid%20error%20correction,%20and%20de%20novo%20assembly%20of%20a%20eukaryotic%20genome.&rft.issn=1088-9051&rft.eissn=1549-5469&svc_dat=CTO&vid=61MACQUARIE_INST:MQ
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.-article.
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https://multisearch.mq.edu.au/discovery/openurl?institution=61MACQUARIE_INST&rfr_id=info:sid%252Fprimo.exlibrisgroup.com-bX-Bx&rft_val_fmt=info:ofi/fmt:kev:mtx:&rft.epage=1756&rft.volume=25&rft_id=info:doi/&rfr_id=info:sid/primo.exlibrisgroup.com-105464210-Bx&resource_type=article&rft.isbn_list=&rft.jtitle=Genome%20research&rft.genre=article&rft.issue=11&rft.auinit1=S&rft.aulast=Goodwin&rft.auinit=S&rft.date=2015&rft.eisbn_list=&rft.spage=1750&rft.au=Goodwin,%20Sara&rft.atitle=Oxford%20Nanopore%20sequencing,%20hybrid%20error%20correction,%20and%20de%20novo%20assembly%20of%20a%20eukaryotic%20genome.&rft.issn=1088-9051&rft.eissn=1549-5469&svc_dat=CTO&vid=61MACQUARIE_INST:MQ
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.-article.
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40
Evaluation of long read error correction software - HAL-Inria
https://hal.inria.fr/hal-01463694/document
denovo correction (only long reads are required) ;. Hybrid correction uses short reads, such as Illumina, which have a much lower error rate ...
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https://hal.inria.fr/hal-01463694/document
denovo correction (only long reads are required) ;. Hybrid correction uses short reads, such as Illumina, which have a much lower error rate ...
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41
Oxford Nanopore sequencing, hybrid error correction, and de ...
https://nanoporetech.com/resource-centre/oxford-nanopore-sequencing-hybrid-error-correction-and-de-novo-assembly-eukaryotic
Back. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Publication ...
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https://nanoporetech.com/resource-centre/oxford-nanopore-sequencing-hybrid-error-correction-and-de-novo-assembly-eukaryotic
Back. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Publication ...
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42
De Novo Assembly Tutorial | Geneious Prime
https://www.geneious.com/tutorials/de-novo-assembly/
Accessed via menu Sequence → Error correct and normalize reads. The Error correct and Normalize reads tool utilizes BBNorm, which is designed to normalize ...
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https://www.geneious.com/tutorials/de-novo-assembly/
Accessed via menu Sequence → Error correct and normalize reads. The Error correct and Normalize reads tool utilizes BBNorm, which is designed to normalize ...
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43
Accurate selfcorrection of errors in long reads using de Bruijn ...
https://arxiv.org/pdf/1604.02233
error rate is necessary for subsequent utilisation of the reads in, e.g., de novo genome assembly. The error correction problem has been ...
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https://arxiv.org/pdf/1604.02233
error rate is necessary for subsequent utilisation of the reads in, e.g., de novo genome assembly. The error correction problem has been ...
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44
CSHL-Led Team Develops De Novo Genome Assembly ...
https://www.genomeweb.com/sequencing/cshl-led-team-develops-emde-novoem-genome-assembly-method-error-corrected-pacbio
Using a tailored error-correction approach and a hybrid assembly method that incorporates reads from multiple sequencing platforms, ...
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https://www.genomeweb.com/sequencing/cshl-led-team-develops-emde-novoem-genome-assembly-method-error-corrected-pacbio
Using a tailored error-correction approach and a hybrid assembly method that incorporates reads from multiple sequencing platforms, ...
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45
Error Correction and de novo Genome Assembly of DNA ...
https://ir.lib.uwo.ca/cgi/viewcontent.cgi?article=6802&context=etd
Keywords: de novo genome assembly, substitution error correction, Illumina, next-generation sequencing, bioinformatics, HiSeq, MiSeq, RACER, ...
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https://ir.lib.uwo.ca/cgi/viewcontent.cgi?article=6802&context=etd
Keywords: de novo genome assembly, substitution error correction, Illumina, next-generation sequencing, bioinformatics, HiSeq, MiSeq, RACER, ...
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46
DecodeGenetics/Ratatosk: Hybrid error correction of ... - GitHub
https://github.com/DecodeGenetics/Ratatosk
Reads color paths in the graph while vertices are annotated with candidate de novo SNPs and short repeats. We demonstrate that Ratatosk can reduce the raw error ...
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https://github.com/DecodeGenetics/Ratatosk
Reads color paths in the graph while vertices are annotated with candidate de novo SNPs and short repeats. We demonstrate that Ratatosk can reduce the raw error ...
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47
evaluation of hybrid.pdf - FULIR
http://fulir.irb.hr/3392/1/evaluation%20of%20hybrid.pdf
Evaluation of hybrid and non-hybrid methods for de novo assembly of ... benchmarked three non-hybrid (in terms of both error correction and ...
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http://fulir.irb.hr/3392/1/evaluation%20of%20hybrid.pdf
Evaluation of hybrid and non-hybrid methods for de novo assembly of ... benchmarked three non-hybrid (in terms of both error correction and ...
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48
Empirical evaluation of methods for de novo genome assembly
https://peerj.com/articles/cs-636.pdf
DA, McCombie WR, Jarvis ED, Phillippy AM. 2012. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature ...
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https://peerj.com/articles/cs-636.pdf
DA, McCombie WR, Jarvis ED, Phillippy AM. 2012. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature ...
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49
Methods for De-novo Genome Assembly - Preprints
https://www.preprints.org/manuscript/202006.0324/v1/download
mon approaches in hybrid assembly pipelines. The main difference between correction and polishing is the expected error rate in the target ...
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https://www.preprints.org/manuscript/202006.0324/v1/download
mon approaches in hybrid assembly pipelines. The main difference between correction and polishing is the expected error rate in the target ...
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50
Paper: error-correcting PacBio reads using high-quality short ...
https://flxlexblog.wordpress.com/2012/07/01/paper-error-correcting-pacbio-reads-using-high-quality-short-reads/
Today, a paper entitled 'Hybrid error correction and de novo assembly of single-molecule sequencing reads' came out in Nature Biotechnology ...
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https://flxlexblog.wordpress.com/2012/07/01/paper-error-correcting-pacbio-reads-using-high-quality-short-reads/
Today, a paper entitled 'Hybrid error correction and de novo assembly of single-molecule sequencing reads' came out in Nature Biotechnology ...
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51
Hybrid genome assembly - Wikipedia
https://en.wikipedia.org/wiki/Hybrid_genome_assembly
Practical approachesEdit · Hybrid error correction and de novo assembly of single-molecule sequencing reads · Automated finishing of bacterial genomes · Using only ...
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https://en.wikipedia.org/wiki/Hybrid_genome_assembly
Practical approachesEdit · Hybrid error correction and de novo assembly of single-molecule sequencing reads · Automated finishing of bacterial genomes · Using only ...
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52
Hybrid Error Correction and De Novo Assembly of ... - YouTube
https://www.youtube.com/watch?v=IZdB7zKZ4TE
cambhealthassoc
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https://www.youtube.com/watch?v=IZdB7zKZ4TE
cambhealthassoc
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53
A Comprehensive Study of De Novo Genome Assemblers
https://journals.sagepub.com/doi/pdf/10.1177/1176934318758650
novo assemblers.4 In the past few years, several de novo sequence ... graph, greedy, and hybrid algorithm.6. De ... Hybrid error correction and de novo.
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https://journals.sagepub.com/doi/pdf/10.1177/1176934318758650
novo assemblers.4 In the past few years, several de novo sequence ... graph, greedy, and hybrid algorithm.6. De ... Hybrid error correction and de novo.
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54
The present and future of de novo whole-genome ... - MyWeb
https://myweb.ttu.edu/daray/Genomes/The_present_and_future.pdf
Key words: de novo assembly algorithms; de Bruijn graph; next-generation ... methods, including hybrid error correction methods [52, 60, 61].
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https://myweb.ttu.edu/daray/Genomes/The_present_and_future.pdf
Key words: de novo assembly algorithms; de Bruijn graph; next-generation ... methods, including hybrid error correction methods [52, 60, 61].
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55
Oxford Nanopore Sequencing and de novo Assembly of a ...
https://typeset.io/pdf/oxford-nanopore-sequencing-and-de-novo-assembly-of-a-56c6j2j1y7.pdf
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Sara Goodwin,1 James Gurtowski,1 Scott ...
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https://typeset.io/pdf/oxford-nanopore-sequencing-and-de-novo-assembly-of-a-56c6j2j1y7.pdf
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Sara Goodwin,1 James Gurtowski,1 Scott ...
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56
Hybrid error correction and de novo assembly of single ...
https://www.slideserve.com/felix/hybrid-error-correction-and-de-novo-assembly-of-single-molecule-sequencing-reads
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Presented by George Roberts III.
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https://www.slideserve.com/felix/hybrid-error-correction-and-de-novo-assembly-of-single-molecule-sequencing-reads
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Presented by George Roberts III.
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57
Eradicating Errors in Third-Gen Sequencing for de Novo ...
https://www.genengnews.com/topics/omics/eradicating-errors-in-third-gen-sequencing-for-de-novo-genome-assembly/
Their published paper is titled “Hybrid error correction and de novo assembly of single-molecule sequencing reads.”.
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https://www.genengnews.com/topics/omics/eradicating-errors-in-third-gen-sequencing-for-de-novo-genome-assembly/
Their published paper is titled “Hybrid error correction and de novo assembly of single-molecule sequencing reads.”.
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58
WORKSHOP: Hybrid de novo genome assembly - Digital Research ...
https://dresa.org.au/materials/workshop-hybrid-de-novo-genome-assembly
We will demonstrate two hybrid-assembly methods using the tools Flye, Pilon, and Unicycler to perform assembly and subsequent error correction. You will learn ...
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https://dresa.org.au/materials/workshop-hybrid-de-novo-genome-assembly
We will demonstrate two hybrid-assembly methods using the tools Flye, Pilon, and Unicycler to perform assembly and subsequent error correction. You will learn ...
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59
Hybrid genome assembly - Nanopore and Illumina
https://www.melbournebioinformatics.org.au/tutorials/tutorials/hybrid_assembly/nanopore_assembly/
De novo assembly is the process of assembling a genome from scratch using only the sequenced reads as input - no reference genome is used. This approach is ...
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https://www.melbournebioinformatics.org.au/tutorials/tutorials/hybrid_assembly/nanopore_assembly/
De novo assembly is the process of assembling a genome from scratch using only the sequenced reads as input - no reference genome is used. This approach is ...
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60
De Novo Assembly Using Illumina Reads
https://www.illumina.com/Documents/products/technotes/technote_denovo_assembly_ecoli.pdf
trast to Velvet, error correction is performed before the actual graph is built. The assemblers ABySS3 also uses the de Bruijn graph method. Its ad-.
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https://www.illumina.com/Documents/products/technotes/technote_denovo_assembly_ecoli.pdf
trast to Velvet, error correction is performed before the actual graph is built. The assemblers ABySS3 also uses the de Bruijn graph method. Its ad-.
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61
Comparison of long-read sequencing technologies in the ...
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000294
We de novo assembled genomes using the hybrid assembler Unicycler and compared different read processing strategies, as well as comparing to ...
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https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000294
We de novo assembled genomes using the hybrid assembler Unicycler and compared different read processing strategies, as well as comparing to ...
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62
The Sesame Genome - Page 236 - Google Books Result
https://books.google.com/books?id=sIg4EAAAQBAJ&pg=PA236&lpg=PA236&dq=hybrid+error+correction+and+de+novo&source=bl&ots=qlBivgRvrn&sig=ACfU3U0GGBsa0PZQtvKgtgs4KFwC9T52rw&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiQAhAD
Genome Res 14 (6):1147–1159 Koren S, Schatz MC, Walenz BP, Martin J, Howard JT et al (2012) Hybrid error correction and de novo assembly of single-molecule ...
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https://books.google.com/books?id=sIg4EAAAQBAJ&pg=PA236&lpg=PA236&dq=hybrid+error+correction+and+de+novo&source=bl&ots=qlBivgRvrn&sig=ACfU3U0GGBsa0PZQtvKgtgs4KFwC9T52rw&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiQAhAD
Genome Res 14 (6):1147–1159 Koren S, Schatz MC, Walenz BP, Martin J, Howard JT et al (2012) Hybrid error correction and de novo assembly of single-molecule ...
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63
De novoアセンブリ関連のツールまとめ（主にショートリード）
https://kazumaxneo.hatenablog.com/entry/2017/06/27/172012
paired-endデータを扱えるが、それだけでなくロングリードを使いhybrid-assemblyを行うことも可能である。 spadesはハプロタイプのような部位もできる限り ...
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https://kazumaxneo.hatenablog.com/entry/2017/06/27/172012
paired-endデータを扱えるが、それだけでなくロングリードを使いhybrid-assemblyを行うことも可能である。 spadesはハプロタイプのような部位もできる限り ...
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64
Oxford Nanopore sequencing, hybrid error correction, and de novo ...
https://ur.booksc.eu/book/46446073/ac63a1
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome | S. Goodwin; J. Gurtowski; S. Ethe-sayers; P. Deshpande; ...
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https://ur.booksc.eu/book/46446073/ac63a1
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome | S. Goodwin; J. Gurtowski; S. Ethe-sayers; P. Deshpande; ...
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65
De novo assembly, BLAST and genome finishing using ...
https://tv.qiagenbioinformatics.com/video/77585467/de-novo-assembly-blast-and-genome
› video › de-novo-ass...
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https://tv.qiagenbioinformatics.com/video/77585467/de-novo-assembly-blast-and-genome
› video › de-novo-ass...
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66
Quantum Information Processing 2023 (4-10 February 2023)
https://indico.cern.ch/event/1175020/page/27680-accepted-talks
A lower bound on the overhead of quantum error correction in low dimensions ... Sergey Bravyi, Yash Sharma, Mario Szegedy and Ronald de Wolf.
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https://indico.cern.ch/event/1175020/page/27680-accepted-talks
A lower bound on the overhead of quantum error correction in low dimensions ... Sergey Bravyi, Yash Sharma, Mario Szegedy and Ronald de Wolf.
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67
Algorithms in Bioinformatics: 15th International Workshop, ...
https://books.google.com/books?id=9mB1CgAAQBAJ&pg=PA187&lpg=PA187&dq=hybrid+error+correction+and+de+novo&source=bl&ots=--cEYz52Nj&sig=ACfU3U2hwf1ca1F0z1NA-IUDILKr9Zclsg&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiFAhAD
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol. 30, 693–700 (2012) 15. Hackl, T., et al.
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https://books.google.com/books?id=9mB1CgAAQBAJ&pg=PA187&lpg=PA187&dq=hybrid+error+correction+and+de+novo&source=bl&ots=--cEYz52Nj&sig=ACfU3U2hwf1ca1F0z1NA-IUDILKr9Zclsg&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiFAhAD
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol. 30, 693–700 (2012) 15. Hackl, T., et al.
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68
Phylogenomics: An Introduction - Page 101 - Google Books Result
https://books.google.com/books?id=ZGsmDwAAQBAJ&pg=PA101&lpg=PA101&dq=hybrid+error+correction+and+de+novo&source=bl&ots=j4HgKWCS2w&sig=ACfU3U1TJdzVNfE9eB-zO96e0B9vdAQTNA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiMAhAD
... Deshpande P, Schatz MC, McCombie WR (2015) Oxford nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.
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https://books.google.com/books?id=ZGsmDwAAQBAJ&pg=PA101&lpg=PA101&dq=hybrid+error+correction+and+de+novo&source=bl&ots=j4HgKWCS2w&sig=ACfU3U1TJdzVNfE9eB-zO96e0B9vdAQTNA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiMAhAD
... Deshpande P, Schatz MC, McCombie WR (2015) Oxford nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.
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69
The Potato Genome - Page 89 - Google Books Result
https://books.google.com/books?id=57xEDwAAQBAJ&pg=PA89&lpg=PA89&dq=hybrid+error+correction+and+de+novo&source=bl&ots=fVQsfdA1pT&sig=ACfU3U0rTb7VZa-zfC_22RyvnruvSeeUHA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiRAhAD
A method has been developed for hybrid error correction and de novo assembly of single-molecule sequencing reads (Koren et al. 2012).
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https://books.google.com/books?id=57xEDwAAQBAJ&pg=PA89&lpg=PA89&dq=hybrid+error+correction+and+de+novo&source=bl&ots=fVQsfdA1pT&sig=ACfU3U0rTb7VZa-zfC_22RyvnruvSeeUHA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiRAhAD
A method has been developed for hybrid error correction and de novo assembly of single-molecule sequencing reads (Koren et al. 2012).
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70
Institutional Perspective on RE Investing, Crowdfunding ...
https://www.alphai.com/podcast/an-institutional-perspective-on-re-investing-crowdfunding-financial-crises/
... performed by De Novo asset managers, these are firms that five years ago, most of them did not exist. ... And so somewhere there's got to be a hybrid.
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https://www.alphai.com/podcast/an-institutional-perspective-on-re-investing-crowdfunding-financial-crises/
... performed by De Novo asset managers, these are firms that five years ago, most of them did not exist. ... And so somewhere there's got to be a hybrid.
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71
Genomic Medicine: Principles and Practice
https://books.google.com/books?id=9vZwBAAAQBAJ&pg=PA95&lpg=PA95&dq=hybrid+error+correction+and+de+novo&source=bl&ots=oWTgQNSQte&sig=ACfU3U3PObg-dRArFQDyyaGUHAI_9LevQA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiNAhAD
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat Biotech. 2012;30(7):693–700. 122. Boetzer M, Pirovano W. Toward almost ...
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https://books.google.com/books?id=9vZwBAAAQBAJ&pg=PA95&lpg=PA95&dq=hybrid+error+correction+and+de+novo&source=bl&ots=oWTgQNSQte&sig=ACfU3U3PObg-dRArFQDyyaGUHAI_9LevQA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiNAhAD
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat Biotech. 2012;30(7):693–700. 122. Boetzer M, Pirovano W. Toward almost ...
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72
Bioinformatics in Aquaculture: Principles and Methods
https://books.google.com/books?id=G0MIDgAAQBAJ&pg=PA71&lpg=PA71&dq=hybrid+error+correction+and+de+novo&source=bl&ots=v81Cx--dgS&sig=ACfU3U3iYSnQOS0D3MRNv7nac17BAAowEA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiOAhAD
(2012) Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology, 30, 693–700.
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https://books.google.com/books?id=G0MIDgAAQBAJ&pg=PA71&lpg=PA71&dq=hybrid+error+correction+and+de+novo&source=bl&ots=v81Cx--dgS&sig=ACfU3U3iYSnQOS0D3MRNv7nac17BAAowEA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiOAhAD
(2012) Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology, 30, 693–700.
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73
Comprehensive Foodomics - Page 497 - Google Books Result
https://books.google.com/books?id=8WvqDwAAQBAJ&pg=PA497&lpg=PA497&dq=hybrid+error+correction+and+de+novo&source=bl&ots=4nH1s7JsPL&sig=ACfU3U1N708ZUZwQsCBFO-hXWO7Ot4HFaA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiPAhAD
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res. 25, 1750–1756. Gordon, S.P., Tseng, E., ...
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https://books.google.com/books?id=8WvqDwAAQBAJ&pg=PA497&lpg=PA497&dq=hybrid+error+correction+and+de+novo&source=bl&ots=4nH1s7JsPL&sig=ACfU3U1N708ZUZwQsCBFO-hXWO7Ot4HFaA&hl=en&sa=X&ved=2ahUKEwiS0Oqmytn7AhW0a_EDHbLDD84Q6AF6BQiPAhAD
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res. 25, 1750–1756. Gordon, S.P., Tseng, E., ...
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74
De Novo Genome Assembly Service
https://dovetailgenomics.com/services/dovetail-genome-assembly/de-novo-genome-assembly/
› services › de-novo-gen...
→ Check Latest Keyword Rankings ←
https://dovetailgenomics.com/services/dovetail-genome-assembly/de-novo-genome-assembly/
› services › de-novo-gen...
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