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Google Keyword Rankings for : example fastq file
1
https://support.illumina.com/bulletins/2016/04/fastq-files-explained.html
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https://support.illumina.com/bulletins/2016/04/fastq-files-explained.html
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2
https://zenodo.org/record/3736457
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https://zenodo.org/record/3736457
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3
https://digitalinsights.qiagen.com/downloads/example-data/
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https://digitalinsights.qiagen.com/downloads/example-data/
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4
https://en.wikipedia.org/wiki/FASTQ_format
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https://en.wikipedia.org/wiki/FASTQ_format
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5
http://www.internationalgenome.org/category/fastq/
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http://www.internationalgenome.org/category/fastq/
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6
https://www.applied-maths.com/download/fastq-files
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https://www.applied-maths.com/download/fastq-files
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7
https://ega-archive.org/datasets/EGAD00001000821/files
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https://ega-archive.org/datasets/EGAD00001000821/files
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8
https://learn.gencore.bio.nyu.edu/ngs-file-formats/fastq-format/
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https://learn.gencore.bio.nyu.edu/ngs-file-formats/fastq-format/
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9
https://sequencing.com/knowledge-center/dna-data-storage/formats/fastq-format-compatibility
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https://sequencing.com/knowledge-center/dna-data-storage/formats/fastq-format-compatibility
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10
https://github.com/fplaza/fastq-sample
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https://github.com/fplaza/fastq-sample
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11
https://www.biostars.org/p/6544/
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https://www.biostars.org/p/6544/
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12
https://thesequencingcenter.com/knowledge-base/fastq-files/
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https://thesequencingcenter.com/knowledge-base/fastq-files/
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13
https://www.ridom.de/seqsphere/u/Download_FASTQ_from_SRA.html
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https://www.ridom.de/seqsphere/u/Download_FASTQ_from_SRA.html
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14
https://compgenomr.github.io/book/fasta-and-fastq-formats.html
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https://compgenomr.github.io/book/fasta-and-fastq-formats.html
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15
https://www.imm.ox.ac.uk/files/ccb/downloading_fastq_geo
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https://www.imm.ox.ac.uk/files/ccb/downloading_fastq_geo
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16
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/fastq-input
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https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/fastq-input
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17
https://training.scicomp.jic.ac.uk/docs/hpc_rnaseq_course_book/raw_data.html
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https://training.scicomp.jic.ac.uk/docs/hpc_rnaseq_course_book/raw_data.html
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18
https://www.zymoresearch.com/blogs/blog/fastq-file-format
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https://www.zymoresearch.com/blogs/blog/fastq-file-format
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19
http://ubwp.buffalo.edu/coegbc/wp-content/uploads/sites/13/2011/06/UB-GBC-Download-Guide.pdf
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http://ubwp.buffalo.edu/coegbc/wp-content/uploads/sites/13/2011/06/UB-GBC-Download-Guide.pdf
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20
https://www.researchgate.net/figure/A-sample-of-the-FASTQ-file_fig2_309134977
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https://www.researchgate.net/figure/A-sample-of-the-FASTQ-file_fig2_309134977
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21
https://www.bioconductor.org/packages/release/data/experiment/vignettes/systemPipeRdata/inst/doc/systemPipeRNAseq.html
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https://www.bioconductor.org/packages/release/data/experiment/vignettes/systemPipeRdata/inst/doc/systemPipeRNAseq.html
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22
https://www.ncbi.nlm.nih.gov/sra/docs/sradownload/
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https://www.ncbi.nlm.nih.gov/sra/docs/sradownload/
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23
http://scikit-bio.org/docs/0.5.3/generated/skbio.io.format.fastq.html
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http://scikit-bio.org/docs/0.5.3/generated/skbio.io.format.fastq.html
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24
https://datacarpentry.org/wrangling-genomics/02-quality-control/
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https://datacarpentry.org/wrangling-genomics/02-quality-control/
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25
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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26
https://rtsf.natsci.msu.edu/genomics/tech-notes/fastqc-tutorial-and-faq/
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https://rtsf.natsci.msu.edu/genomics/tech-notes/fastqc-tutorial-and-faq/
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27
https://www.youtube.com/watch?v=AvuTp3s_a1o
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https://www.youtube.com/watch?v=AvuTp3s_a1o
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28
https://www.youtube.com/watch?v=MrVpn0vpIYU
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https://www.youtube.com/watch?v=MrVpn0vpIYU
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29
https://qiita.ucsd.edu/static/doc/html/tutorials/no-raw-sequences.html
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https://qiita.ucsd.edu/static/doc/html/tutorials/no-raw-sequences.html
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30
https://labs.epi2me.io/notebooks/Introduction_to_fastq_file.html
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https://labs.epi2me.io/notebooks/Introduction_to_fastq_file.html
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31
https://pythonforbiologists.com/randomly-sampling-reads-from-a-fastq-file.html
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https://pythonforbiologists.com/randomly-sampling-reads-from-a-fastq-file.html
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32
https://bioinformaticsworkbook.org/dataAnalysis/RNA-Seq/RNA-SeqIntro/RNAseq-using-a-genome.html
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https://bioinformaticsworkbook.org/dataAnalysis/RNA-Seq/RNA-SeqIntro/RNAseq-using-a-genome.html
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33
https://bioinformatics.uconn.edu/resources-and-events/tutorials-2/file-formats-tutorial/
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https://bioinformatics.uconn.edu/resources-and-events/tutorials-2/file-formats-tutorial/
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34
http://qiime.org/1.7.0/tutorials/processing_illumina_data.html
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http://qiime.org/1.7.0/tutorials/processing_illumina_data.html
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35
https://www.york.ac.uk/res/dasmahapatra/teaching/MBiol_sequence_analysis/workshop2_2019.html
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https://www.york.ac.uk/res/dasmahapatra/teaching/MBiol_sequence_analysis/workshop2_2019.html
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36
http://biopython.org/DIST/docs/api/Bio.SeqIO.QualityIO-module.html
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http://biopython.org/DIST/docs/api/Bio.SeqIO.QualityIO-module.html
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37
https://groups.google.com/g/3d-genomics/c/JzL_67a5G8k
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https://groups.google.com/g/3d-genomics/c/JzL_67a5G8k
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38
https://genomics.sschmeier.com/ngs-qc/index.html
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https://genomics.sschmeier.com/ngs-qc/index.html
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39
https://depts.washington.edu/cshlab/downloads/Xpression_user_guide.pdf
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https://depts.washington.edu/cshlab/downloads/Xpression_user_guide.pdf
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40
https://galaxyproject.org/tutorials/ngs/
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https://galaxyproject.org/tutorials/ngs/
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41
https://wikis.utexas.edu/display/CoreNGSTools/Working+with+FASTQ+files
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https://wikis.utexas.edu/display/CoreNGSTools/Working+with+FASTQ+files
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42
https://www.hadriengourle.com/tutorials/qc/
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https://www.hadriengourle.com/tutorials/qc/
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43
https://docs.qiime2.org/jupyterbooks/cancer-microbiome-intervention-tutorial/040-appendices/human-read-fastq-filter.html
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https://docs.qiime2.org/jupyterbooks/cancer-microbiome-intervention-tutorial/040-appendices/human-read-fastq-filter.html
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44
https://bigomics.ch/blog/how-to-convert-fastq-files-into-read-count-tables/
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https://bigomics.ch/blog/how-to-convert-fastq-files-into-read-count-tables/
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45
https://www.echemi.com/community/what-is-the-index-fastq-file-sample-i-fastq-gz-generated-when-demultiplexing-illumina-paired-end-runs_mjart2205183021_318.html
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https://www.echemi.com/community/what-is-the-index-fastq-file-sample-i-fastq-gz-generated-when-demultiplexing-illumina-paired-end-runs_mjart2205183021_318.html
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46
https://btep.ccr.cancer.gov/wp-content/uploads/Working-with-FASTQ-and-FASTA-data-%C2%B7-AmyStonelakeBTEP-Wiki.pdf
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https://btep.ccr.cancer.gov/wp-content/uploads/Working-with-FASTQ-and-FASTA-data-%C2%B7-AmyStonelakeBTEP-Wiki.pdf
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47
https://campus.datacamp.com/courses/introduction-to-bioconductor-in-r/introducing-shortread?ex=5
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https://campus.datacamp.com/courses/introduction-to-bioconductor-in-r/introducing-shortread?ex=5
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48
https://cellgeni.readthedocs.io/en/latest/raw.html
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https://cellgeni.readthedocs.io/en/latest/raw.html
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49
https://www.folkstalk.com/2022/09/how-to-make-a-file-fastq-gz-with-code-examples.html
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https://www.folkstalk.com/2022/09/how-to-make-a-file-fastq-gz-with-code-examples.html
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50
https://bioinformatics.stackexchange.com/questions/5178/what-is-the-index-fastq-file-sample-i-fastq-gz-generated-when-demultiplexing
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https://bioinformatics.stackexchange.com/questions/5178/what-is-the-index-fastq-file-sample-i-fastq-gz-generated-when-demultiplexing
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51
https://www.genomatix.de/online_help/help/sequence_formats.html
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https://www.genomatix.de/online_help/help/sequence_formats.html
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52
http://www.ericll.org/wp-content/uploads/2017/11/Basic-bioinformatics-from-fastq-to-variants.pdf
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http://www.ericll.org/wp-content/uploads/2017/11/Basic-bioinformatics-from-fastq-to-variants.pdf
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53
https://learn.microsoft.com/en-us/azure/genomics/quickstart-input-pair-fastq
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https://learn.microsoft.com/en-us/azure/genomics/quickstart-input-pair-fastq
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54
https://academic.oup.com/nar/article/38/6/1767/3112533
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https://academic.oup.com/nar/article/38/6/1767/3112533
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55
http://hannonlab.cshl.edu/fastx_toolkit/
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http://hannonlab.cshl.edu/fastx_toolkit/
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56
https://www.biorxiv.org/content/10.1101/2021.12.17.473121v1.full
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https://www.biorxiv.org/content/10.1101/2021.12.17.473121v1.full
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57
https://www.sequencing.uio.no/illumina-services/4.%20Data%20delivery/results-miseq-V01.html
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https://www.sequencing.uio.no/illumina-services/4.%20Data%20delivery/results-miseq-V01.html
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58
https://d1lqgfmy9cwjff.cloudfront.net/bio/tech/articles/nu_fusionapp.pdf
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https://d1lqgfmy9cwjff.cloudfront.net/bio/tech/articles/nu_fusionapp.pdf
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59
https://gatk.broadinstitute.org/hc/en-us/articles/360039568932--How-to-Map-and-clean-up-short-read-sequence-data-efficiently
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https://gatk.broadinstitute.org/hc/en-us/articles/360039568932--How-to-Map-and-clean-up-short-read-sequence-data-efficiently
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60
https://www.drive5.com/usearch/manual/upp_labels_sample.html
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https://www.drive5.com/usearch/manual/upp_labels_sample.html
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61
https://rdrr.io/bioc/ShortRead/man/Sampler-class.html
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https://rdrr.io/bioc/ShortRead/man/Sampler-class.html
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62
https://maq.sourceforge.net/fastq.shtml
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https://maq.sourceforge.net/fastq.shtml
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63
https://hackmd.io/@ranmk/cm-processing
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https://hackmd.io/@ranmk/cm-processing
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64
https://figshare.com/articles/dataset/ONT_FASTQ_files/7554293
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https://figshare.com/articles/dataset/ONT_FASTQ_files/7554293
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65
http://www.sthda.com/english/wiki/fastqcr-an-r-package-facilitating-quality-controls-of-sequencing-data-for-large-numbers-of-samples
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http://www.sthda.com/english/wiki/fastqcr-an-r-package-facilitating-quality-controls-of-sequencing-data-for-large-numbers-of-samples
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66
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0049110
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https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0049110
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67
https://findleyfinseth.squarespace.com/s/Lab5.html
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https://findleyfinseth.squarespace.com/s/Lab5.html
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68
https://bioinf.shenwei.me/seqkit/usage/
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https://bioinf.shenwei.me/seqkit/usage/
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69
https://reference.wolfram.com/language/ref/format/FASTQ.html
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https://reference.wolfram.com/language/ref/format/FASTQ.html
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70
https://sbc.shef.ac.uk/workshops/2020-02-12-command-line/read-quality.nb.html
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https://sbc.shef.ac.uk/workshops/2020-02-12-command-line/read-quality.nb.html
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71
https://documentation.partek.com/display/FLOWDOC/Importing+and+Demultiplexing+Illumina+BCL+Files
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https://documentation.partek.com/display/FLOWDOC/Importing+and+Demultiplexing+Illumina+BCL+Files
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72
https://forums.developer.nvidia.com/t/troubleshooting-download-example-fastq-files/211668
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https://forums.developer.nvidia.com/t/troubleshooting-download-example-fastq-files/211668
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73
https://medium.com/@robertopreste/counting-sequences-in-fasta-fastq-files-ad7d2675b40f
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https://medium.com/@robertopreste/counting-sequences-in-fasta-fastq-files-ad7d2675b40f
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74
https://cyverse-leptin-rna-seq-lesson-dev.readthedocs-hosted.com/en/latest/section-6.html
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https://cyverse-leptin-rna-seq-lesson-dev.readthedocs-hosted.com/en/latest/section-6.html
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75
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1469-3
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https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1469-3
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76
https://darrenjw.wordpress.com/tag/fastq/
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https://darrenjw.wordpress.com/tag/fastq/
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77
https://slowkow.com/notes/barcodes/
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https://slowkow.com/notes/barcodes/
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78
https://www.yenchungchen.com/2018/06/28/subsampling-a-fastq-file-with-awk/
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https://www.yenchungchen.com/2018/06/28/subsampling-a-fastq-file-with-awk/
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79
http://costalab.org/wp-content/uploads/2017/05/lecture_3_ngs.pdf
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http://costalab.org/wp-content/uploads/2017/05/lecture_3_ngs.pdf
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80
https://nebula.org/blog/how-to-start-exploring-your-raw-genomic-data/
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https://nebula.org/blog/how-to-start-exploring-your-raw-genomic-data/
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81
http://www.sixthresearcher.com/list-of-helpful-linux-commands-to-process-fastq-files-from-ngs-experiments/
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http://www.sixthresearcher.com/list-of-helpful-linux-commands-to-process-fastq-files-from-ngs-experiments/
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82
https://medicine.uiowa.edu/humangenetics/genomics/genomics-division/genome-sequencing/ngs-data-storage-policy
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https://medicine.uiowa.edu/humangenetics/genomics/genomics-division/genome-sequencing/ngs-data-storage-policy
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83
https://genome.ucsc.edu/FAQ/FAQformat.html
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https://genome.ucsc.edu/FAQ/FAQformat.html
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84
https://confluence.sammeth.net/display/SIM/Demo+-+Create+Fastq+file
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https://confluence.sammeth.net/display/SIM/Demo+-+Create+Fastq+file
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85
https://genomicislands.wordpress.com/2013/11/20/subsampling-large-fastq-files/
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https://genomicislands.wordpress.com/2013/11/20/subsampling-large-fastq-files/
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86
https://snipcademy.com/sequence-file-formats
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https://snipcademy.com/sequence-file-formats
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87
https://www.open-bio.org/2009/09/25/biopython-fast-fastq/
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https://www.open-bio.org/2009/09/25/biopython-fast-fastq/
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88
https://genome.sph.umich.edu/wiki/C%2B%2B_Class:_FastQFile
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https://genome.sph.umich.edu/wiki/C%2B%2B_Class:_FastQFile
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89
https://biohpc.cornell.edu/doc/RNA-Seq-2019-exercise1.pdf
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https://biohpc.cornell.edu/doc/RNA-Seq-2019-exercise1.pdf
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90
http://docs.blast2go.com/user-manual/tools-(pro-feature)/fastq-preprocessing
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http://docs.blast2go.com/user-manual/tools-(pro-feature)/fastq-preprocessing
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91
https://mdpi-res.com/d_attachment/ijms/ijms-19-03687/article_deploy/ijms-19-03687.pdf?version=1542789186
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https://mdpi-res.com/d_attachment/ijms/ijms-19-03687/article_deploy/ijms-19-03687.pdf?version=1542789186
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92
https://www.mdpi.com/article/10.3390/electronics11111783/s1
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https://www.mdpi.com/article/10.3390/electronics11111783/s1
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93
https://stackoverflow.com/questions/6638555/how-can-i-create-a-fastq-sequence-file
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https://stackoverflow.com/questions/6638555/how-can-i-create-a-fastq-sequence-file
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94
https://blog.goldenhelix.com/secondary-analysis-snv-part-ii/fastaa/
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https://blog.goldenhelix.com/secondary-analysis-snv-part-ii/fastaa/
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95
https://support.sentieon.com/versions/201808.05/manual/examples/examples/
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https://support.sentieon.com/versions/201808.05/manual/examples/examples/
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96
https://www.coursera.org/lecture/dna-sequencing/lecture-sequencing-reads-in-fastq-format-Hvtbd
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https://www.coursera.org/lecture/dna-sequencing/lecture-sequencing-reads-in-fastq-format-Hvtbd
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